Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs17165351 chr5:126132255 T/C 0 294 21.23 20.63 1.73 KM Plot
CESC rs17303178 chr12:12485351 G/A 0 296 22.83 20.67 0.47 KM Plot
CESC rs17375328 chr12:12485292 T/C 0 298 22.88 20.63 0.47 KM Plot
CESC rs17400968 chr1:165094293 T/C 6.53E-5 289 22.4 21.3 9.17 KM Plot
CESC rs17401901 chr5:96091925 C/T 1.36E-5 296 21.17 24.53 5.1 KM Plot
CESC rs17481759 chr5:96114695 A/G 1.23E-5 298 21.33 24.08 5.1 KM Plot
CESC rs17481856 chr5:96116808 G/A 1.23E-6 298 21.33 24.17 6.73 KM Plot
CESC rs17504173 chr1:112309926 A/G 0 298 21.33 20.47 4.07 KM Plot
CESC rs17569368 chr1:112303791 A/T 0 298 21.33 20.47 4.07 KM Plot
CESC rs1811483 chr3:161130900 A/G 1.79E-5 292 22.83 21.4 20.15 KM Plot
CESC rs1829453 chr17:35809843 A/G 4.33E-5 291 21.4 23.78 8.45 KM Plot
CESC rs1863820 chr10:88153925 T/C 2.08E-14 296 3.33 24.3 21.17 KM Plot
CESC rs1863821 chr10:88150602 A/G 3.12E-14 293 3.33 24.6 21.17 KM Plot
CESC rs1891370 chr10:135073395 G/A 3.61E-8 292 9.03 21.97 21.4 KM Plot
CESC rs1896512 chr10:88199157 G/A 1.18E-14 298 3.33 24.9 21.17 KM Plot